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courses:mapreduce-tutorial:step-29 [2012/01/30 15:47]
majlis 		courses:mapreduce-tutorial:step-29 [2012/02/05 18:49]
straka
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-====== MapReduce Tutorial : Custom input formats ======+====== MapReduce Tutorial : Custom sorting and grouping comparators. ======
  
-Every custom format reading keys of type ''K'' and values of type ''V'' must subclass [[http://hadoop.apache.org/common/docs/r1.0.0/api/org/apache/hadoop/mapreduce/InputFormat.html|InputFormat<K, V>]]. Usually it is easier to subclass [[http://hadoop.apache.org/common/docs/r1.0.0/api/org/apache/hadoop/mapreduce/lib/input/FileInputFormat.html|FileInputFormat<K, V>]] -- the file listing and splitting is then solved by the ''FileInputFormat'' itself.+====== Fast sorting comparator ======
  
-===== FileAsPathInputFormat =====+The keys are sorted before processed by a reducer, using a 
 +[[http://hadoop.apache.org/common/docs/r1.0.0/api/org/apache/hadoop/io/RawComparator.html|Raw comparator]]. The default comparator uses the [[compareTo]] method provided by the key type, which is a subclass of [[http://hadoop.apache.org/common/docs/r1.0.0/api/org/apache/hadoop/io/WritableComparable.html|WritableComparable]]. Consider for example the following ''IntPair'' type:
  
-We start by creating ''FileAsPathInputFormat'', which reads any file, splits it and for each split return exactly one input pair (file_path, start-length) with types (''Text'', ''Text''), where ''file_path'' is path to the file and ''start-length'' is a string containing two dash-separated numbers: start offset of the split and length of the split. 
- 
-When implementing new input format, we must 
-  * decide whether the input files are splittable. Usually uncompressed files are splittable and compressed files are not splittable, with the exception of ''SequenceFile'', which is always splittable. 
-  * implement [[http://hadoop.apache.org/common/docs/r1.0.0/api/org/apache/hadoop/mapreduce/RecordReader.html|RecordReader<K, V>]]. The ''RecordReader'' is the one doing the real work -- it is given a file split and it reads (key, value) pairs of types (K, V), until there are any. 
- 
-Our ''FileAsPathInputFormat'' is simple -- we allow splitting of uncompressed file and the ''RecordReader'' reads exactly one input pair. 
 <code java> <code java>
-public class FileAsPathInputFormat extends FileInputFormat<Text, Text> { +public static class IntPair implements WritableComparable<IntPair> { 
-  // Helper class, which does the actual work -- produce the (path, offset-length) input pair. +  private int first = 0; 
-  public static class FileAsPathRecordReader extends RecordReader<Text, Text> { +  private int second = 0;
-    private Path file; +
-    long start, length; +
-    private Text key, value; +
-     +
-    public void initialize(InputSplit genericSplit, TaskAttemptContext context) throws IOException { +
-      FileSplit split = (FileSplit) genericSplit; +
-      file = split.getPath(); +
-      start = split.getStart(); +
-      length = split.getLength(); +
-      key = null;    +
-      value = null;  +
-    }                +
-    public boolean nextKeyValue() throws IOException { +
-      if (key != null) return false; +
-                     +
-      key = new Text(file.toString()); +
-      value = new Text(String.format("%d-%d", start, length)); +
-                     +
-      return true;   +
-    }                +
-                     +
-    public Text getCurrentKey() { return key; } +
-    public Text getCurrentValue() { return value; } +
-    public float getProgress() { return (key == null) ? 0 : 1; } +
-    public synchronized void close() throws IOException {} +
-  } +
-       +
-  // Use the helper class as a RecordReader in out file format. +
-  public RecordReader<Text, Text> createRecordReader(InputSplit split, TaskAttemptContext context) { +
-    return new FileAsPathRecordReader(); +
-  }    +
-       +
-  // Allow splitting uncompressed files. +
-  protected boolean isSplittable(JobContext context, Path filename) { +
-    CompressionCodec codec = new CompressionCodecFactory(context.getConfiguration()).getCodec(filename); +
-    return codec == null; +
-  } +
-} +
-</code> +
- +
-===== WholeFileInputFormat ===== +
- +
-Next we create ''WhileFileInputFormat'', which for each file return exactly one input pair (input_path, file_content) with types (''Text'', ''BytesWritable''). The format does not allow file splitting -- each file will be processed by exactly one mapper. +
- +
-<code java> +
-public class WholeFileInputFormat extends FileInputFormat<Text, BytesWritable> { +
-  // Helper class, which does the actual work -- reads the (path, content) input pair. +
-  public static class WholeFileRecordReader extends RecordReader<Text, BytesWritable> { +
-    private Path file; +
-    int length; +
-    private Text key; +
-    private BytesWritable value; +
-    DataInputStream in; +
- +
-    public void initialize(InputSplit genericSplit, TaskAttemptContext context) throws IOException { +
-      FileSplit split = (FileSplit) genericSplit; +
-      file = split.getPath(); +
-      length = (int) split.getLength(); +
-      key = null; +
-      value = null; +
- +
-      FileSystem fs = file.getFileSystem(context.getConfiguration()); +
-      in = fs.open(split.getPath()); +
- +
-      CompressionCodecFactory compressionCodecs = new CompressionCodecFactory(context.getConfiguration()); +
-      CompressionCodec codec = compressionCodecs.getCodec(file); +
-      if (codec != null) +
-        in = new DataInputStream(codec.createInputStream(in)); +
-    } +
- +
-    public boolean nextKeyValue() throws IOException { +
-      if (key != null) return false; +
- +
-      byte[] data = new byte[length]; +
-      in.readFully(data); +
- +
-      key = new Text(file.toString()); +
-      value = new BytesWritable(data);+
  
-      return true; +  public void set(int left, int right) { first = left; second = right; } 
-    }+  public int getFirst() { return first; } 
 +  public int getSecond() { return second; }
  
-    public Text getCurrentKey() { return key; } +  public void readFields(DataInput in) throws IOException { 
-    public BytesWritable getCurrentValue() { return value; } +    first = in.readInt(); 
-    public float getProgress() { return key == null ? 0 : 1; } +    second = in.readInt();
-    public synchronized void close() throws IOException { if (in != null) { in.close(); in = null; } }+
   }   }
- +  public void write(DataOutput out) throws IOException { 
-  // Use the helper class as a RecordReader in out file format. +    out.writeInt(first); 
-  public RecordReader<Text, BytesWritable> createRecordReader(InputSplit split, TaskAttemptContext context) { +    out.writeInt(second);
-    return new WholeFileRecordReader();+
   }   }
  
-  // Do not allow splitting. +  public int compareTo(IntPair o) { 
-  protected boolean isSplittable(JobContext context, Path filename) { +    if (first != o.first) return first < o.first ? -1 : 1; 
-    return false;+    else return second < o.second ? -1 : second == o.second ? 0 : 1;
   }   }
 } }
 </code> </code>
  
-===== Exercise: ParagraphTextInputFormat =====+If we would like in a Hadoop job to sort the ''IntPair'' using the first element only, we can provide a ''RawComparator'' and set it using [[http://hadoop.apache.org/common/docs/r1.0.0/api/org/apache/hadoop/mapreduce/Job.html#setSortComparatorClass(java.lang.Class)|job.setSortComparatorClass]]:
  
-Implement ''ParagraphTextInputFormat''. This format reads plain text files and splits it into //paragraphs//. A paragraph consists of lines, all of which are nonempty, and different paragraphs are separated by at least one empty line. The ''ParagraphTextInputFormat'' reads one paragraph at a time and return its first line as key and the rest of lines as values. 
  
-The ''ParagraphTextInputFormat'' should allow splitting of uncompressed files. Be careful to properly implement reading paragraphs which are on split boundary. The easiest way of doing so is the following: + 
-  * if the offset of the split is 0, start reading at the beginning of the split. If the offset of the split is larger than 0, start reading at the offset and ignore first paragraph found. +====== Grouping comparator ====== 
-  * read all paragraphs that start before the end of the split boundary, even if they end after the split boundary. //If a paragraph starts just after the current split (i.e., on the split boundary), read it too.// + 
-It is simple to verify that with these rules, all paragraphs are read exactly once.+In a reduce, it is guaranteed that keys are processed in ascending order. Sometimes it would be useful if the //values associated with one key// could also be processed in ascending order.
  
 ---- ----
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 <table style="width:100%"> <table style="width:100%">
 <tr> <tr>
-<td style="text-align:left; width: 33%; "></html>[[step-28|Step 28]]: Running multiple Hadoop jobs in one class.<html></td>+<td style="text-align:left; width: 33%; "></html>[[step-28|Step 28]]: Custom data types.<html></td>
 <td style="text-align:center; width: 33%; "></html>[[.|Overview]]<html></td> <td style="text-align:center; width: 33%; "></html>[[.|Overview]]<html></td>
-<td style="text-align:right; width: 33%; "></html>[[step-30|Step 30]]: Implementing iterative MapReduce jobs faster using All-Reduce.<html></td>+<td style="text-align:right; width: 33%; "></html>[[step-30|Step 30]]: Custom input formats.<html></td>
 </tr> </tr>
 </table> </table>
 </html> </html>
 +

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