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grid [2017/09/29 18:20]
popel [Advanced usage] 		grid [2017/10/02 16:56]
popel [Advanced usage]
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   # We have used two handy qsub parameters:   # We have used two handy qsub parameters:
   #  -cwd  ... the script is executed in the current directory (the default is your home)   #  -cwd  ... the script is executed in the current directory (the default is your home)
-  #  -j y  ... stdout and stderr outputs are merged and redirected to a file (''script.sh.o*'')+  #  -j y  ... stdout and stderr outputs are merged and redirected to a file (''script.sh.o$JOB_ID'')
   # We have also provided two parameters for our script "Hello" and "World".   # We have also provided two parameters for our script "Hello" and "World".
   # The qsub prints something like   # The qsub prints something like
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 ''qsub **-p** -100'' ''qsub **-p** -100''
 Define a priority of your job as a number between -1024 and 0. Only SGE admins may use a number higher than 0. The default is 0, i.e. the highest possible priority. SGE uses the priority to decide when to start which pending job in the queue (it computes a real number called ''prior'', which is reported in ''qstat'', which grows as the job is waiting in the queue). Note that once a job is started, you cannot "unschedule" it, so from that moment on, it is irrelevant what was its priority. Define a priority of your job as a number between -1024 and 0. Only SGE admins may use a number higher than 0. The default is 0, i.e. the highest possible priority. SGE uses the priority to decide when to start which pending job in the queue (it computes a real number called ''prior'', which is reported in ''qstat'', which grows as the job is waiting in the queue). Note that once a job is started, you cannot "unschedule" it, so from that moment on, it is irrelevant what was its priority.
 +
 ''qsub **-o** LOG.stdout **-e** LOG.stderr'' ''qsub **-o** LOG.stdout **-e** LOG.stderr''
-redirect std{out,err} to separate files with given names+redirect std{out,err} to separate files with given names, instead of the defaults ''$JOB_NAME.o$JOB_ID'' and ''$JOB_NAME.e$JOB_ID''.
  
 ''qsub **-@** optionfile'' ''qsub **-@** optionfile''

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